Created commands module to better organize functionality and improve extensibility

See merge request oak-tree/medical-imaging/sonador-cli!15

Improvements to Sonador CLI interfaces for pushing and pulling data

See merge request oak-tree/medical-imaging/sonador-cli!14

Fixes and improvements to Sonador CLI client from OAI data import

See merge request oak-tree/medical-imaging/sonador-cli!13

Refactors to CLI tool caused by changes to client structure

See merge request oak-tree/medical-imaging/sonador-cli!12

Additions to Sonador CLI tools needed for Segaway Airflow testing

See merge request oak-tree/medical-imaging/sonador-cli!11

Add a flag to CLI for the uploader to check Orthanc to see if the series UID exists before transferring the images

See merge request oak-tree/medical-imaging/sonador-cli!9

- Moves files to a destination folder after succesful upload.
  This allows for long-running operations to be resumed if there
  was a transport failure with the client.

Refactored CLI client to utilize methods from Sonador client library (part of Segaway development)

See merge request oak-tree/medical-imaging/sonador-cli!8

Modified Sonador CLI to use high-level API of Sonador client

See merge request oak-tree/medical-imaging/sonador-cli!7

- Modified API to use get_imageserver rather than
  fetch_sonador_dataobject

Moved Sonador library and Oak-Tree client library to package dependencies

See merge request oak-tree/medical-imaging/sonador-cli!6

Implement support for removing studies from Orthanc

See merge request oak-tree/medical-imaging/sonador-cli!5

Added pattern to allow for matching DCM images named IM* without file extension

See merge request oak-tree/medical-imaging/sonador-cli!4

Added query-download command to patient, study, image API

See merge request oak-tree/medical-imaging/sonador-cli!3

Add methods for querying and retrieving data from Orthanc

See merge request oak-tree/medical-imaging/sonador-cli!2